When we create an invoice by applying TDS, the TDS payment will be getting recorded against the invoice as per the TDS section.
As for most of the TDS section, the TDS will be applied on the taxable value/net amount of invoice.
E.g. The invoice total amount is 100rs with 5%tax.
If the 1% 194C TDS section applied, then the TDS amount will be applied on invoice net amount i.e. 95.24 which will be 0.95.
This results in a reduction of 0.95rs from the invoice total amount and is recorded as TDS against invoice.
The remaining amount i.e. 99.05 need to be collected from the buyer and can be recorded against invoice with the help of record payment option.
